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,1
* BioTech Global, 22-40 Brentwood Avenue, Newcastle Upon Tyne, NE2 3DH, UK; and
Institute of Pathology, Case Western Reserve University, 2085 Adelbert Road, Cleveland, Ohio 44106
1 To whom requests for reprints should be addressed at Institute of Pathology, Case Western Reserve University, 2085 Adelbert Road, Cleveland, OH 44106. E-mail: shu.chen{at}case.edu
| Abstract |
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Key Words: urine prion protein transmissible spongiform encephalopathies bovine spongiform encephalopathy Creutzfeldt-Jakob disease
| Introduction |
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-helical PrPC may be. It is, however, a membrane-bound, sialo-glycolipoprotein with a glycophosphatidylinositol moiety (9), many of which are known to be associated with transmembrane-signaling functions (10).
The protein sequences of PrPC and PrPSc are identical (11). However, the two isoforms differ in physicochemical properties. The normal PrPC isoform exists as a soluble, dominantly
-helical monomer and is almost completely degraded by a proteolytic enzyme such as proteinase K (PK). In contrast, PrPSc has a ß-sheetrich conformation, and when subjected to PK, a large C-terminal 27- to 30-kDa segment of PrPSc resists further degradation allowing detection by Western blotting (1214). The unique property of PrPSc in affected brain tissue to PK digestion has been used in the postmortem diagnosis of TSEs.
Elevated levels of the 14-3-3 protein in the cerebrospinal fluid of patients with CJD are currently used as preliminary screen assays for TSEs, but their specificity is not assured (1517). The development of a specific, noninvasive test is critical in assessing the prevalence of TSEs along with the source of infection and potential treatment options. Therefore, there is an essential need for a preclinical diagnostic test for TSEs.
Although PrPC is predominantly expressed in brain tissue, it is unclear whether a significant amount of PrPC is circulated in body fluids and eventually eliminated from the body. Shaked et al. (18) used an ultracentrifugation and dialysis technique to show that PrP can be detected by the mouse monoclonal antibody (mAb) 3F4 in 10 ml to 50 ml of urine from normal and diseased subjects. However, the validity and reproducibility of this finding has been challenged by two recent reports (19, 20). The evidence of a cross-reactivity of the anti-mouse IgG with either contaminating bacterial proteins (19) or urinary IgG fragments (20) was used to argue that Shaked et al. (18) mistakenly identified nonspecific urinary proteins as PrP. Therefore, the presence of either PrPC or PrPSc in urine was never reliably demonstrated in these studies (1820). Nevertheless, it is widely hoped that the ability to demonstrate the presence of PrP in urine, as well as in blood, will provide a useful marker of preclinical TSEs.
In the present study, we describe a simple, reliable ion-capture method that can be used to concentrate PrP from small or large volumes (i.e., 1 ml to 1 liter) of urine samples. Following solid-phase extraction, normal PrP in less than 1 ml of urine collected from healthy individuals was sufficient for detection by Western blotting. We demonstrated the successful detection of normal PrP in all urine specimens with the anti-C antibody (21, 22) against the C-terminal region of PrP, but not with 3F4 mAb (23) recognizing an epitope in the N-terminal region of PrP that was also used unsuccessfully in the two recent studies (19, 20). Our findings highlight the importance of understanding the unique structural properties of urinary PrP in devising an appropriate analytic strategy.
| Materials and Methods |
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Enrichment of PrP From Urine.
Proteins in urine were concentrated by ion-capturebased, solid-phase extraction using the urine concentration kit (GB98/00374 and 9601054; BioTec Global, Newcastle Upon Tyne, UK). All buffers and ion-capture resin mentioned here were supplied with the kit. The procedure was performed at room temperature. Urine samples were centrifuged at 1000 g for 10 mins to sediment the occasional debris. The supernatant was transferred to fresh tubes, and 1 ml of the concentrate buffer (250 mM sodium phosphate, pH 7.5; 68 mM potassium chloride; and 3 M sodium chloride) was added to each 50-ml urine sample. After a gentle mix, the samples were subdivided into 1-, 3-, 5-, and 10-ml aliquots. To each tube that contained 1- to 5-ml urine samples, we added 100 µl of the ion-capture resin (i.e., calcium phosphate, which was supplied with the kit), and 200 µl was added to the 10-ml urine sample. The samples were gently mixed by hand flicking and were then left on a shaking platform (Red Rotor; Hoefer Pharmacia Biotech, San Francisco, CA) at the speed setting of 3 for 60 mins and agitated by hand every 10 mins to ensure that the resin was well-dispersed in suspension. After the protein adsorption, the tubes were centrifuged at 500 g for 5 mins and the supernatant was discarded. The resulting pellet was resuspended in 0.75-ml of wash buffer (10 mM sodium phosphate, pH 7.5; 3 mM potassium chloride; and 137 mM sodium chloride), transferred to 1-ml microfuge tubes, and centrifuged at 16,000 g for 10 secs. The supernatant was discarded and replaced with 30 µl of the sodium dodecyl sulfate (SDS) sample buffer (63 mM Tris-hydrochloride, pH 6.8; 2 mM EDTA, 3% SDS, 10% glycerol, and 1% ß-mercaptoethanol). Samples were then boiled for 10 mins and centrifuged at 16,000 g for 30 secs. The supernatant containing eluted proteins was used for Western blotting.
Western Blotting.
Samples were applied to a 12% or 16% Tris-glycine SDS polyacrylamide gel electrophoresis (SDS-PAGE; precast gels; Invitrogen, Carlsbad, CA) in a mini-cell apparatus (Bio-Rad, Hercules, CA) and subsequently transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA) at 70 V for 2 hrs at 4°C. The membranes were then blocked using blocking buffer containing 3% fat-free milk and 1% bovine serum albumin (BSA) in Tris-buffered saline supplemented with 0.1% Tween 20 (TBS-T; pH 7.6) for 1 hr. Then, the membranes were incubated with one of the following primary antibodies: (i) the rabbit anti-C antiserum (21, 22) against human PrP residues 220231 at a dilution of 1:3000, and (ii) mouse 3F4 mAb (23) recognizing an epitope of human PrP residues 109112 at a dilution of 1:50,000 in antibody dilution buffer (1% [v/v] normal goat serum, 0.05% [w/v] BSA, 0.1% [w/v] thimerosal in TBS) for 2 hrs at room temperature or overnight at 4°C. The membranes were then rinsed four times in TBS-T for 15 mins each, followed by incubation with an appropriate secondary antibody (donkey anti-rabbit IgG F(ab')2 fragment (catalog number NA9310) and sheep anti-mouse IgG F(ab')2 fragment (catalog number NA9340) conjugated with horseradish peroxidase (Amersham Biosciences, Piscataway, NJ) for 1 hr at room temperature. After being rinsed another four times in TBS-T, PrP was visualized on Kodak X-Omat films by enhanced chemiluminescence (ECL Plus kit; Amersham Biosciences).
To evaluate the amount of PrP in urine sample, protein concentrates were prepared from 0.5- to 10-ml urine samples as previously described. Protein concentrates were run in parallel with 1 ng to 8 ng of the recombinant human PrP 23231 (Abcam, Cambridge, MA). Western blotting was performed as previously described. The amount of PrP was quantified by densitometry according to the intensity of PrP bands using the UN-SCAN-IT software (Silk Scientific, Orem, UT).
Peptide: N-Glycosidase F (PNGase F) Treatment.
Deglycosylation was performed using PNGase F and other reagents provided by the supplier (New England BioLabs, Beverly, MA). Proteins were concentrated from 10 ml of urine as previously described. The final pellet was suspended in 30 µl of denaturing buffer (0.5% SDS, 1% ß-mercaptoethanol) and boiled for 10 mins. The supernatant containing eluted and denatured proteins was supplemented with G7 buffer (50 mM sodium phosphate, pH 7.5) and 1% NP-40 and digested with 3 µl of PNGase F (500,000 U/ml) for 60 mins at 37°C. Digestion was stopped by the addition of SDS sample buffer followed by boiling for 10 mins. Samples were applied to a 10%- to 20%-gradient Tris-tricine SDS-PAGE using precast gels (Invitrogen) and were, subsequently, subjected to Western blotting as previously described.
Protease Digestion.
Proteins were concentrated from 10-ml aliquots of urine samples as previously described. After the pellet was resuspended in 200 µl of wash buffer, 20 µl of trypsin (2 mg/ml) or PK (2 mg/ml) was added for on-resin digestion. Control was made in which no enzyme was added. All tubes were incubated for 60 mins at 37°C. Following enzyme digestion, the samples were centrifuged for 30 secs at 16,000 g in microfuge tubes, and the supernatant was removed. The pellet was washed with 0.75 ml of wash buffer and resuspended in 30 µl of SDS sample buffer followed by boiling for 10 mins. Samples were run on 10%- to 20%-gradient Tris-tricine SDS-PAGE gels and were subjected to Western blotting as previously described.
Spiking of Brain Homogenate Into Urine.
To model the possibility of our method being used for the PrPSc detection in urine, brain homogenate of both normal and scrapie-adapted (i.e., 263K prion) hamsters was spiked into the urine samples. The total brain homogenate (10% [w/v]) of normal and 263K scrapie hamsters was made in phosphate-buffered saline (pH 7.5) followed by brief centrifugation. Urine (1 ml) was mixed with 20 µl of the concentrate buffer and 100 µl of the ion-capture resin. The clarified brain homogenate (10 µl) was spiked into these urine samples. The samples were left for incubation on a shaking platform (Red Rotor; Hoefer Pharmacia Biotech) at the speed setting of 3 for 60 mins at room temperature. After adsorption of proteins onto the resin, samples were centrifuged at 16,000 g for 10 secs and the supernatant was discarded. The resulting pellet was resuspended in 0.75 ml of wash buffer. After centrifugation again at 16,000 g for 10 secs, the supernatant was discarded and 0.3 ml of fresh wash buffer was added. Each sample was then divided into two groups: 0.1 ml for the control sample without the addition of PK and 0.2 ml for PK digestion at final enzyme concentration of 50 µg/ml. All samples were incubated for 60 mins at 37°C. Reaction was stopped by adding 1 µl of 100 mM Pefa block (Roche Molecular Biochemicals, Indianapolis, IN). Samples were centrifuged for 20 secs at 16,000 g, and the supernatant was removed. The pellet was resuspended in 30 µl of SDS sample buffer and processed as previously described for Western blotting.
| Results |
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On Western blots probed by the rabbit anti-C antiserum (21, 22) recognizing human PrP residues 220231, detectable amounts of PrPC migrating at 28 kDa to 30 kDa were observed in urine samples of all healthy individuals (N = 50). When urine samples were subdivided into 1-, 3-, and 5-ml aliquots and all proteins concentrated from the samples were applied, a proportional increase in the amount of PrPC was demonstrated (Fig. 1
, Lanes 13). The total protein loading in these urine samples displayed a similar trend of increase as judged by silver staining (Fig. 1
, Lanes 46), which demonstrates a quantitative recovery of urinary proteins by the solid-phase extraction. However, no bands were observed after immunoblotting with 3F4 mAb (Fig. 1
, Lanes 79). To test if the binding of the secondary IgG to nonspecific proteins such as bacterial outer membrane proteins (19) or urinary human IgG fragments (20) accounted for the false positive detection of PrP as reported previously (18), control experiments were performed with the use of secondary antibodies (i.e., donkey anti-rabbit IgG, sheep anti-mouse IgG, F(ab')2 fragment) in the absence of the respective primary antibodies (i.e., rabbit anti-C antibody, mouse 3F4 mAb). No immunoreactive bands were observed for either secondary anti-rabbit IgG (Fig. 1
, Lanes 1012) or secondary anti-mouse IgG (Fig. 1
, Lanes 1315) under our experimental conditions, confirming that our method reliably detected PrPC in human urine, not any other nonspecific proteins. The detection of PrPC could be achieved in as little as 1 ml of urine (Fig. 1
) or less (Fig. 2
) from normal individuals (N = 50).
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Because PrPC is a glycoprotein that contains two consensus sites for asparagine-linked glycosylation, PNGase F digestion was performed to remove glycans and reveal the protein backbone of urinary PrPC. Following deglycosylation (Fig. 3
), the heterogeneous 28 kDa to 30 kDa urinary PrPC bands (Lane 1) shifted mainly to a lower molecular weight band of 18 kDa (Lane 2). This is consistent with the similar, approximately 10-kDa shift expected from the removal of two asparagine-linked complex glycans from PrP, as shown in cultured cells and brain tissue (21). Therefore, our detection of urinary PrP is highly specific, without artifacts associated with the unrelated proteins (1820). As expected, PrPC in the urine of normal individuals was sensitive to digestion by both trypsin and PK, as exogenous protease digestion almost completely degraded PrP into small peptides of less than 7 kDa (Fig. 3
).
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| Discussion |
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Semiquantitative studies in which recombinant PrP was applied along with urinary protein concentrates from 0.5- to 10-ml samples revealed that the lower detection limit on Western blots is better than 1 ng of PrPC in urine. On average, each healthy individual excreted approximately 7 ng of PrPC per ml of urine. If a healthy person produces 1 liter of urine a day, the daily excretion of a microgram amount of normal PrPC into the urine is expected. Variations in the amounts of PrPC per ml of urine were observed among normal individuals. The reason for the observed variations is unclear, but they are not unexpected because protein excretion per ml of urine is likely to fluctuate among different individuals in untimed-morning urine used in the present study. A more accurate estimation of the rate of PrPC excretion and its normalization among healthy individuals may require a correlation analysis of baseline parameters such as total urine protein levels, creatinine clearance, and the use of accurately timedurine collection (e.g., 24-hr urine specimens). Moreover, the exact origin of urinary PrPC is yet to be determined. Nevertheless, consistent detection of PrP in the urine of normal, healthy individuals raises the question of whether the protein generated in the body is efficiently reutilized. It is possible that most proteins are, indeed, reutilized. However, if even a small proportion of PrPC is not reutilized, it could filter through the kidney.
Deglycosylation by PNGase F is often used to reduce the heterogeneity of PrP molecules. Treatment with PNGase F revealed that PrPC in urine was glycosylated, but the protein was truncated. Following deglycosylation, the size of urinary PrPC shifted from 2830 kDa to 18 kDa. As the full-length PrPC following deglycosylation has an electrophoretic mobility of about 27 kDa on SDS-PAGE gels (20), our data suggest that PrPC in human urine is mostly truncated with a size much smaller than that expected from the full-length protein (25). Such a truncation is unlikely an artifact generated during our experimental procedures because the same results were obtained from fresh urine samples containing the added protease inhibitors following concentration at a lower temperature (10°C) or when proteins were precipitated in cold methanol at 20°C. Therefore, the truncated PrPC in human urine is likely the result of proteolytic processing that occurred in vivo before the excretion, a normal metabolic event previously shown in human neuroblastoma cells and the brain (21), possibly by a calpain-dependent proteolytic process (26).
It would be desirable to study a large number of individuals from whom 24-hr urine samples were obtained. Furthermore, it would be essential to investigate whether there is any difference in the amounts of PrPC excreted into the urine between normal individuals and those with TSEs. A previous report (18) on the detection of the urinary PrPSc in TSEs using 3F4 mAb has recently been challenged as an artifact (19, 20), possibly due to lack of the 3F4 epitope in urinary PrP as demonstrated in the present study. Therefore, it is unclear whether TSEs lead to the excretion of urinary PrP with the PrPSc-like conformation. Assuming this is the case, the ability to detect PrPC may lay the foundation for a future technique to be used in PrPSc detection. Furthermore, the positive data obtained in our experiments in which brain PrPSc was spiked into urine suggest the potential of our method for identifying urinary PrPSc in TSEs which may have, so far, evaded detection due its extremely low concentration. Equally important is a further analysis of other biochemical properties of urinary PrP between normal individuals and those affected by CJD. In the present study, we present a simple, convenient, and efficient means to concentrate and detect trace amounts of PrP in urine. Our assay may be further developed to determine whether any unique characteristics of urinary PrP, or its interaction with other molecules, might be associated with a preclinical state of TSEs. Finally, it is our hope that the technique presented here will evoke further interests and improvements in diagnostic strategies for TSEs.
| Acknowledgments |
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| Footnotes |
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2 Current address: West Acres, West Road, Hexham NE46 3DD, UK. ![]()
Received for publication May 12, 2004. Accepted for publication February 21, 2005.
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